================================================== file name: sinKne6.fa sequences: 1854 total length: 723605295 bp (703710494 bp excl N/X-runs) GC level: 40.32 % bases masked: 192276202 bp ( 26.57 %) ================================================== number of length percentage elements* occupied of sequence -------------------------------------------------- SINEs: 18569 2290723 bp 0.32 % ALUs 286 68456 bp 0.01 % MIRs 7034 978031 bp 0.14 % LINEs: 109582 36580267 bp 5.06 % LINE1 905 329993 bp 0.05 % LINE2 55021 18511113 bp 2.56 % L3/CR1 0 0 bp 0.00 % LTR elements: 22219 7208656 bp 1.00 % ERVL 0 0 bp 0.00 % ERVL-MaLRs 0 0 bp 0.00 % ERV_classI 4074 1026657 bp 0.14 % ERV_classII 219 25719 bp 0.00 % DNA elements: 203922 42557740 bp 5.88 % hAT-Charlie 17098 3224355 bp 0.45 % TcMar-Tigger 0 0 bp 0.00 % Unclassified: 451356 87455084 bp 12.09 % Total interspersed repeats:176092470 bp 24.34 % Small RNA: 6433 777261 bp 0.11 % Satellites: 686 93934 bp 0.01 % Simple repeats: 319776 14177443 bp 1.96 % Low complexity: 37636 2111948 bp 0.29 % ================================================== * most repeats fragmented by insertions or deletions have been counted as one element The query species was assumed to be homo RepeatMasker version open-4.0.6 , default mode run with rmblastn version 2.6.0+ The query was compared to classified sequences in ".../sinKne5_consensi.fa.classified" RepBase Update 20150807, RM database version 20150807