================================================== file name: corWhi6.fa sequences: 2615 total length: 712478531 bp (693396324 bp excl N/X-runs) GC level: 42.02 % bases masked: 174564028 bp ( 24.50 %) ================================================== number of length percentage elements* occupied of sequence -------------------------------------------------- SINEs: 27795 4196741 bp 0.59 % ALUs 0 0 bp 0.00 % MIRs 8446 1586816 bp 0.22 % LINEs: 89739 28210888 bp 3.96 % LINE1 470 130468 bp 0.02 % LINE2 41222 12839798 bp 1.80 % L3/CR1 0 0 bp 0.00 % LTR elements: 19085 10162489 bp 1.43 % ERVL 0 0 bp 0.00 % ERVL-MaLRs 0 0 bp 0.00 % ERV_classI 657 284779 bp 0.04 % ERV_classII 0 0 bp 0.00 % DNA elements: 189794 41114950 bp 5.77 % hAT-Charlie 8688 1718246 bp 0.24 % TcMar-Tigger 0 0 bp 0.00 % Unclassified: 394174 76128730 bp 10.69 % Total interspersed repeats:159813798 bp 22.43 % Small RNA: 7170 881527 bp 0.12 % Satellites: 1462 332499 bp 0.05 % Simple repeats: 291767 12589344 bp 1.77 % Low complexity: 34457 1919315 bp 0.27 % ================================================== * most repeats fragmented by insertions or deletions have been counted as one element The query species was assumed to be homo RepeatMasker version open-4.0.6 , default mode run with rmblastn version 2.6.0+ The query was compared to classified sequences in ".../corWhi5_consensi.fa.classified" RepBase Update 20150807, RM database version 20150807